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Donnelly J.P, Cleary P., Newby P., Ettinger R..  2004.  Coupling instrumental and geological records of sea-level change: Evidence from southern New England of an increase in the rate of sea-level rise in the late 19th century. Geophysical Research Letters. 31(5)
Donnelly J.P, Bertness M.D.  2001.  Rapid shoreward encroachment of salt marsh cordgrass in response to accelerated sea-level rise. Proc Natl Acad Sci U S A. 98(25):14218-23.
Donnelly J.P.  2005.  Evidence of past intense tropical cyclones from backbarrier salt pond sediments: A case study from Isla de Culebrita, Puerto Rico, USA. Journal of Coastal Research. SI42:201-210.
Donnelly J.P, Butler J., Roll S., Wengren M., Webb T..  2004.  A backbarrier overwash record of intense storms from Brigantine, New Jersey. Marine Geology. 210(1-4):107-121.
Donnelly J.P, Driscoll N., Uchupi E., Keigwin L., Schwab W., Thieler E.R, Swift S..  2005.  Catastrophic meltwater discharge down the Hudson River Valley: A potential trigger for the Intra-Allerod cold period. Geology. 33:89-92.
Donnelly J.P, Giosan L..  2008.  Research focus - Tempestuous highs and lows in the Gulf of Mexico. Geology. 36(9):751-752.
Donnelly J.P, Roll S., Wengren M., Butler J., Lederer R., Webb T..  2001.  Sedimentary evidence of intense hurricane strikes from New Jersey. Geology. 29(7):615-618.
Donnelly J.P, Woodruff J.D.  2007.  Intense hurricane activity over the past 5,000 years controlled by El Nino and the West African monsoon. Nature. 447(7143):465-8.